This is my entire script as it is now if you need to look at the whole thing.
code:
 
BREAK ON
"Source Directory:" ?
GETS $workingdir		;enter source directory
"Destination Directory:" ?
GETS $destdir			;enter destination dirctory

WHILE 1=1 
"Project Folder Number:" ? 
GETS $projfile 
if EXIST ("$workingdir\$projfile\*.dgn")  
SHELL "XCOPY $workingdir\$projfile $DestDir\$projfile /E /I /Q" ? 
endif
LOOP